“SigEMD: A powerful method for differential gene expression analysis in single-cell RNA sequencing data,” T. Wang, S. Nabavi, 2018.

https://github.com/NabaviLab/SigEMD

 

“VarSimLab: A pipeline to automatically synthesize short reads with genomic aberrations”, A. Hosny, F. Zare,  S. Nabavi, 2017.

https://github.com/NabaviLab/VarSimLab

 

“CNV-Sim: a copy number variation simulator for whole-genome and targeted sequencing”, A. Hosny, F. Zare,  S. Nabavi, 2016.

https://nabavilab.github.io/CNV-Sim/

 

“EMDomics: An R Package for differential analysis of genomics data.” D. Schmolze, S. Nabavi, and A. H. Beck, Bioconductor, 2015.

http://www.bioconductor.org/packages/release/bioc/html/EMDomics.html